rs29858901 SNP Detail

Summary

• ID
  rs29858901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32583071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATCCAA CTTTTGCAGG
  TGCCCATCAA TGTTTTAAGC ACTTTACACC CTAACCCATT TACTTTCCCA CAATTCATGA
  AGTAGGCATT TTTAGTATTT TATAGATGAG GTAGCTGCCA TTCATATGGA TAAAGGGGCT
  TCCCTGGCAA AAGCATCTCA TTTGCTAACT CTGTAAAGAA CCTCTCAGGA CACATGCTGT
  R
  AAACCTCTCT TGGAAGGTGG AACATGTAGA GTCCTTGGGC TTCACCCTCG ATCAATCAAT
  CAATGGTTTA ACAAGATTCC CAGGTGATTC CTAACAAAGT TTAAATCATG AACAATTAAT
  TTTCTTGAGT AATACCTCTT ACAGTAAGTA GACACACACA GCTCACTCCA GTAACCCCAG
  AAAACCAATC AAGACCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576037	NES12884654	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29858901					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576037	NES12884654	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32583071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13058	CpG island 13058	405 bp proximal
Gm66043	predicted gene, 66043	within coordinates
Mfn1	mitofusin 1	543 bp upstream
Rr397636	regulatory region 397636	330 bp upstream
Rr574980	regulatory region 574980	1359 bp distal
Rr574981	regulatory region 574981	53 bp proximal
Rr574982	regulatory region 574982	554 bp proximal
Rr574983	regulatory region 574983	659 bp proximal
Tssr28756	transcription start site region 28756	530 bp upstream
Tssr28757	transcription start site region 28757	610 bp upstream
Tssr28758	transcription start site region 28758	635 bp upstream
Tssr28759	transcription start site region 28759	657 bp upstream
Tssr28760	transcription start site region 28760	716 bp upstream