rs29858663 SNP Detail

Summary

• ID
  rs29858663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32387173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTAGAGT AACTGACAGC
  TCAAGGGATG GGAAAACAGC TTAAGGGATG GGAAAACAGA GTGAGTTCAG GATCTAGCTT
  GTCAAAAAGA TAAAAGAGAA AGTCATTTTT AAGATACTCC TCTAAATGAC CTACAGTACA
  AAGGAAGGGA TGGAAGGAAC TCTCGACCAG GCCGGCCTCG AGACAGTGAG CACTGGGCAT
  Y
  AGCACCAGCC TTTTCCAAAT GTCCTGTCTC CTGAGCTGCA ACTCACTGTA CAGAAACTAT
  TCTGCCCCTG CCCCAAACAC ATCACATTCA GGAAAAGCTT AGAGCTTCAA ACTTGGTTTT
  TATGCTGTCC CAGTGACTCA CTCTCACACG CTGTGCCTTT ATTTCATTGT TTTTCTCACT
  TCCCCAGTCT TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49576729	NES12857721	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29858663					SNP	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576729	NES12857721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32387173 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	329 bp proximal
Rr574941	regulatory region 574941	581 bp proximal
Rr574942	regulatory region 574942	1890 bp proximal
Zmat3	zinc finger matrin type 3	1768 bp downstream