rs29858662 SNP Detail

Summary

• ID
  rs29858662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32387282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGATACTC CTCTAAATGA
  CCTACAGTAC AAAGGAAGGG ATGGAAGGAA CTCTCGACCA GGCCGGCCTC GAGACAGTGA
  GCACTGGGCA TTAGCACCAG CCTTTTCCAA ATGTCCTGTC TCCTGAGCTG CAACTCACTG
  TACAGAAACT ATTCTGCCCC TGCCCCAAAC ACATCACATT CAGGAAAAGC TTAGAGCTTC
  M
  AACTTGGTTT TTATGCTGTC CCAGTGACTC ACTCTCACAC GCTGTGCCTT TATTTCATTG
  TTTTTCTCAC TTCCCCAGTC TTTTTTTTTT TTTTTTTTTT TTTTGAGGAT CTAATTCCTT
  GCTCCCGGTG TAGAGACTTG CACTTACGAT CACTTCATTC TCAGGTCTGT TCTTCTTGTC
  CACATGCAGC AAAATGTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49576728	NES12857722	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29858662					SNP	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576728	NES12857722	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32387282 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	220 bp proximal
Rr574941	regulatory region 574941	472 bp proximal
Rr574942	regulatory region 574942	1781 bp proximal
Zmat3	zinc finger matrin type 3	1659 bp downstream