rs29858657 SNP Detail

Summary

• ID
  rs29858657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32387907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCTGAC TTTAAGCTCC
  TCACAATGGC TAGATGCAAG CTTTGAAGAG TCCACACGGT GGCGCTAAAT ACCTATGGGC
  CAAGTCTATA ACCCAGTGAA CTGTTATGAA AATCAGAGCA AAGGAGCCTC TGGCAAACAA
  GGATTAGATA ATGAAGCTAA TATGAAAGCC ATCTTGTTCT TGTCTGGAGG GAAGGCTGCC
  R
  TCCAAAATAC ATTTGAAGTT CTAATTACAT ACCTAAAAAC CCAAATGGCA AGCCTAACTT
  ACCAGCTTCT CTCTCTTCCA AAGGCAGGTC TACCTCTGGT CGCAGAGGTA GATTCCAGGG
  CCAGGTACAT TCCAGGGCCA AGTACACATC TCATGTATGT TAGGGGGTTA CACGTGTGTT
  AGACACATTT ATATTAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49576723	NES12857733	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29858657					SNP	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576723	NES12857733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32387907 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	within coordinates
Rr574941	regulatory region 574941	132 bp distal
Rr574942	regulatory region 574942	1156 bp proximal
Zmat3	zinc finger matrin type 3	1034 bp downstream