rs29858656 SNP Detail

Summary

• ID
  rs29858656
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32387940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT TTGAAGTTCT AATTACATAC
  M
  TAAAAACCCA AATGGCAAGC CTAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49576722	NES12857734	PERLEGEN	MM_PANEL2	f	SNP			C	C		A		C	A	C		A
ss134747980	ENSMUSSNP2223677	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss320697624	CHEV_3_32232713	CHEVERUD	SCREENING_POP	f	SNP							A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29858656					SNP	A	A	C	C	A	A	A	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576722	NES12857734	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32387940 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	within coordinates
Rr574941	regulatory region 574941	165 bp distal
Rr574942	regulatory region 574942	1123 bp proximal
Zmat3	zinc finger matrin type 3	1001 bp downstream