rs29858654 SNP Detail

Summary

• ID
  rs29858654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32388130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTACATAC CTAAAAACCC
  AAATGGCAAG CCTAACTTAC CAGCTTCTCT CTCTTCCAAA GGCAGGTCTA CCTCTGGTCG
  CAGAGGTAGA TTCCAGGGCC AGGTACATTC CAGGGCCAAG TACACATCTC ATGTATGTTA
  GGGGGTTACA CGTGTGTTAG ACACATTTAT ATTAAGATTT TTTGTCTCGG TCCTATTAAC
  R
  CTCTCATTGC ACTGCAATAA ACTGTCTTCA TTTCTAAGTT CTCAATAGTT TGAGTATCCC
  ACAAATAGGA TAAATTTTTG TGCCCTGAGC TCAAAAGACA AGTCTTAAAG CTCTTCACAA
  ACACTGGGTG CGGCCTTCAC ACTCTCCTAT CAGGTCACCA GTGGCCTGGG AATGTCCGGT
  GTGGTCTTAC AGGCAGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49576720	NES12857738	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29858654					SNP	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576720	NES12857738	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32388130 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	28 bp distal
Rr574941	regulatory region 574941	355 bp distal
Rr574942	regulatory region 574942	933 bp proximal
Zmat3	zinc finger matrin type 3	811 bp downstream