rs29857931 SNP Detail

Summary

• ID
  rs29857931
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32388392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATAGGAT AAATTTTTGT
  GCCCTGAGCT CAAAAGACAA GTCTTAAAGC TCTTCACAAA CACTGGGTGC GGCCTTCACA
  CTCTCCTATC AGGTCACCAG TGGCCTGGGA ATGTCCGGTG TGGTCTTACA GGCAGCTGTG
  AGGCATAGGC TGGGGCATGA CCTTGGACTG AGGGCCAAGG TCCCCATCTG GGAAAACCTA
  S
  AGCAAGGAAA CCTGCAAGGC TCCTGGGACT TAGGCACCTC TGATGGCCCT CCTCATCCCA
  TCTTAAAACT TACAACCTAC TTTTCAAACA GACATTTAAA TTCAAAGCAT GATGCATGCA
  CTCCACAGCA CTCCAAAGAC TCTGTGAGGA CTGCATTCCA GTGACTATGT CCATAACCCC
  ATTTCATAGG TGGAATGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49576717	NES12857744	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29857931					SNP	G	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576717	NES12857744	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32388392 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	290 bp distal
Rr574941	regulatory region 574941	617 bp distal
Rr574942	regulatory region 574942	671 bp proximal
Zmat3	zinc finger matrin type 3	549 bp downstream