rs29857927 SNP Detail

Summary

• ID
  rs29857927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32388817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGTGTT TCTTTCCAGG
  AGCAGGAGTT GTCATTCTTC TGGGTTCATT CTCTCAGAAT TTGAAGAGAA CATAAATATC
  AGAAGGTATC ACAAAACAGA ATACACCCCG GTCCCAGGTT AGCTGGGAAG GAAGAGTCGG
  AGGTGGATGG GTAGCTAGGC CAACTCCACA GCAAGTCCTC AAATTCAGTA TTCTAAGCCT
  Y
  GGAAAGCACA CAGTAGACCA CATACCGCTG TGAACTGGGA GCGCACATCC CACCTGAAGT
  ATGGGGATGA CAGCTGGGTG CTAATCACTG ATGCTAACTT CCTCCCGACT CAGAACCGAA
  CGCTTTTGAG ACAAGACTCA GAAACTGTTT TATTGAACTG AACACAAAAA GCCCGTTACA
  ATGTCATCAA GCCTTTATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss49576713	NES12857752	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs29857927					SNP	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576713	NES12857752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32388817 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	715 bp distal
Rr574941	regulatory region 574941	1042 bp distal
Rr574942	regulatory region 574942	246 bp proximal
Zmat3	zinc finger matrin type 3	124 bp downstream