rs29857926 SNP Detail

Summary

• ID
  rs29857926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32388840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTTGTC ATTCTTCTGG
  GTTCATTCTC TCAGAATTTG AAGAGAACAT AAATATCAGA AGGTATCACA AAACAGAATA
  CACCCCGGTC CCAGGTTAGC TGGGAAGGAA GAGTCGGAGG TGGATGGGTA GCTAGGCCAA
  CTCCACAGCA AGTCCTCAAA TTCAGTATTC TAAGCCTTGG AAAGCACACA GTAGACCACA
  Y
  ACCGCTGTGA ACTGGGAGCG CACATCCCAC CTGAAGTATG GGGATGACAG CTGGGTGCTA
  ATCACTGATG CTAACTTCCT CCCGACTCAG AACCGAACGC TTTTGAGACA AGACTCAGAA
  ACTGTTTTAT TGAACTGAAC ACAAAAAGCC CGTTACAATG TCATCAAGCC TTTATCAGAA
  ATCAGTACAT ACATGAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49576712	NES12857753	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29857926					SNP	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576712	NES12857753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32388840 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	738 bp distal
Rr574941	regulatory region 574941	1065 bp distal
Rr574942	regulatory region 574942	223 bp proximal
Zmat3	zinc finger matrin type 3	101 bp downstream