rs29857925 SNP Detail

Summary

• ID
  rs29857925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32388845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCATTCT TCTGGGTTCA
  TTCTCTCAGA ATTTGAAGAG AACATAAATA TCAGAAGGTA TCACAAAACA GAATACACCC
  CGGTCCCAGG TTAGCTGGGA AGGAAGAGTC GGAGGTGGAT GGGTAGCTAG GCCAACTCCA
  CAGCAAGTCC TCAAATTCAG TATTCTAAGC CTTGGAAAGC ACACAGTAGA CCACATACCG
  Y
  TGTGAACTGG GAGCGCACAT CCCACCTGAA GTATGGGGAT GACAGCTGGG TGCTAATCAC
  TGATGCTAAC TTCCTCCCGA CTCAGAACCG AACGCTTTTG AGACAAGACT CAGAAACTGT
  TTTATTGAAC TGAACACAAA AAGCCCGTTA CAATGTCATC AAGCCTTTAT CAGAAATCAG
  TACATACATG AGAATACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49576711	NES12857755	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T		C	T	C		T
ss320697626	CHEV_3_32233618	CHEVERUD	SCREENING_POP	f	SNP					T				C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29857925					SNP	C	C	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576711	NES12857755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32388845 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	743 bp distal
Rr574941	regulatory region 574941	1070 bp distal
Rr574942	regulatory region 574942	218 bp proximal
Zmat3	zinc finger matrin type 3	96 bp downstream