rs29857828 SNP Detail

Summary

• ID
  rs29857828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31658182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTAGACC AAAGTAAATT CCAAGGCAGC AGACATCGTT
  TGCACAGAGG AAACCAGAAC CCACTGCAGG TGAGCACATC TGTTGTCAGG GCGTTAGAGT
  Y
  TCTGACACCA AAGAAACATT AGTTTGCCCA TTTGCACAGT AGGGATCTTT CATACCATTA
  CTTTAATTTT AAAAATTGAT TATTATTTTT ACTGATGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45436256	mCV22693116	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss49574804	NES12854600	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		C		T	T		C	C	C	C		C
ss134738154	ENSMUSSNP2477987	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
ss320694881	CHEV_3_31502955	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29857828					SNP	C	C	C	T	C	T	C	C	C	T	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49574804	NES12854600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31658182 () rs orientation: forward

Symbol	Name	Function Class
Rr574917	regulatory region 574917	481 bp distal
Rr574918	regulatory region 574918	594 bp distal
Rr574919	regulatory region 574919	468 bp distal