rs29856199 SNP Detail

Summary

• ID
  rs29856199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31511669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCTCCA AGACATTCTG
  CCAAAGTTAA ATTGCTCTGG TGGGTAGCAT TCATTCAGCC CCATCTTGTT CTAAATCCTC
  ACACTGCGGT GTGGGATGGG GGAGAAGCTG AGTTAAGGTT TCCCTAGAGT TGGATATTAG
  CATTAAAAAT GCTAGAATCA GAAATACAGA CTGTAACAGG AGAGGAGACC ATGTTGGGCA
  Y
  GCTTAGATTT TGTAAGCACT TAGCTAAAGC TTGTGAGGAC TTAGTCTGTG CTGGGAGAAG
  GTGGAGAGAG CAAAGACAGA TAAACAGGAT GGAAAGCACT GAGATCCACG CAAACATTCT
  CAGTTATCCT CCCTACAAGC TCCTTCCTCT CTCCCGTGGG TTGTTAGTGT TTGGAGCTGG
  ATGTCATCTA CTAACACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49575135	NES12859728	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29856199					SNP	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49575135	NES12859728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31511669 () rs orientation: forward

Symbol	Name	Function Class
Rr374770	regulatory region 374770	1928 bp downstream
Rr574911	regulatory region 574911	493 bp proximal