rs29856198 SNP Detail

Summary

• ID
  rs29856198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31511739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATCCTC ACACTGCGGT
  GTGGGATGGG GGAGAAGCTG AGTTAAGGTT TCCCTAGAGT TGGATATTAG CATTAAAAAT
  GCTAGAATCA GAAATACAGA CTGTAACAGG AGAGGAGACC ATGTTGGGCA TGCTTAGATT
  TTGTAAGCAC TTAGCTAAAG CTTGTGAGGA CTTAGTCTGT GCTGGGAGAA GGTGGAGAGA
  R
  CAAAGACAGA TAAACAGGAT GGAAAGCACT GAGATCCACG CAAACATTCT CAGTTATCCT
  CCCTACAAGC TCCTTCCTCT CTCCCGTGGG TTGTTAGTGT TTGGAGCTGG ATGTCATCTA
  CTAACACTGG TGGGGGTGGC TGACTTGGCT GAACTCTGGG AAGCAGCCAG AGAGGAACTG
  TGAGAAGTTC TTAGGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49575134	NES12859729	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29856198					SNP	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49575134	NES12859729	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31511739 () rs orientation: forward

Symbol	Name	Function Class
Rr374770	regulatory region 374770	1998 bp downstream
Rr574911	regulatory region 574911	423 bp proximal
Rr574912	regulatory region 574912	1967 bp proximal