rs29852986 SNP Detail

Summary

• ID
  rs29852986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31655793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGC TGCTCTGCAC AAGATCAAGT
  Y
  AACATGGTCA GCCTACCTTC CAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45518616	mCV22693104	ABI	CRAMUS_MOUSE	f	SNP		C	C				C		T
ss49574822	NES12854653	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C		C	T	T	T		C	C	C	C		C
ss134738145	ENSMUSSNP3092001	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
ss320694877	CHEV_3_31500566	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29852986					SNP	C	C	C	T	T	C	C	C	T	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49574822	NES12854653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31655793 () rs orientation: forward

Symbol	Name	Function Class
Rr574917	regulatory region 574917	1660 bp proximal
Rr574918	regulatory region 574918	1774 bp proximal
Rr574919	regulatory region 574919	1900 bp proximal