rs29852984 SNP Detail

Summary

• ID
  rs29852984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31655978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACAAGAT CAAGTCAACA
  TGGTCAGCCT ACCTTCCAAA GGACTCACTA AGAGGGCTCA GCAAGTCACA GAATTGGGAG
  AGGAGACAGT AAGATGGAAG GGGTGTGTTG GAGGTCATGA GAGGACAGAA AGGCATTGGT
  GTGGATATGA TCAAGATATG TTGTAAATGT GTGTGAAAAT GTCAAAGAAT AAATCAAAGA
  Y
  AGTCTTAAAA ATAAAACCCT TCTGGAAACC TCTTTGGGGA GGGGTTATCA TACATTACCC
  CACTTCTTCC ACGTGCAACA ACAGACCTAA GAATTTAATC TAAAGAAGTA GTGAGTTTTA
  AAAGACCAAG AGGATAGTCC TAAGGCTGAC TGTGAGTGGT CCCTTTGTGG TGTCCTCTCA
  TTTAATCCTT AACACTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49574820	NES12854655	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29852984					SNP	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49574820	NES12854655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31655978 () rs orientation: forward

Symbol	Name	Function Class
Rr574917	regulatory region 574917	1475 bp proximal
Rr574918	regulatory region 574918	1589 bp proximal
Rr574919	regulatory region 574919	1715 bp proximal