rs29852117 SNP Detail

Summary

• ID
  rs29852117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31656538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAGAGAC GCATACTCCA
  CGATGAGAAA AGTGTCTGAA GAAAGGAAGT GGTTGTTGCC TTGTTGGGAG AAATAGGGAG
  CAAAGCAGTG GCTCTCAACC CTACAAAGCC ACAAATTCCT TCTTCTCTAT TCTGGACTTC
  ATATTTACCT TTTATCATCC AAAATCAATG CTTACACATG ACATCATTGA TTTGCATGCA
  Y
  ATTTATTAGC TTAATCTAAT GTACTGGACT GTTAAATAAG AATAAAATCA TTTAAGCAAT
  ACATAATATT TTTTAAAAAT GTATTTAACA CAAAGCACTC CAGGCTACCA CATCCTATGT
  AGCTTGGTCC TGGAAACCTG ACAGAAGTGA CCCAGGAATG AAGAAACAGC AGATACAGAG
  AAAAGCTAGA ATCAGGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49574813	NES12854663	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29852117					SNP	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49574813	NES12854663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31656538 () rs orientation: forward

Symbol	Name	Function Class
Rr574917	regulatory region 574917	915 bp proximal
Rr574918	regulatory region 574918	1029 bp proximal
Rr574919	regulatory region 574919	1155 bp proximal