rs29848813 SNP Detail

Summary

• ID
  rs29848813
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3839336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTTTACT TGGTTTGCTA
  ATAAAATCAA TAGTACCATG TGTTCTCTAC AGAAAACAAT GACCAAGTGT TTGCAGAGAC
  ATCCAACATA CTTTTTTCAG GATCGTGAAT TCCTTATTTC AGGTCAGGCT AATAAAGTTA
  ATGGAGAGAA GGTCAAAATT TGTCTGAGTC CTGAACAATA ACAATATTAT AAAATATAAA
  M
  GTTTTAGGAG TCATCTTCGG CCCTCTCTCA CCAGGCACAG TAGAGACAAC TTGGTTAAGT
  TGCAATTGCT GCTGAGCTCT GAATCTGCAG AAACTCTTGG GCCCAGGATG CTGTAGTCCC
  CATGCTATAC TGTCCCTGGG GTACTGCTGA ATGAAGCAGT GAAATGAAGT GAAATGAAGA
  CTCTTTCTTT AAAAACAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48392373	NES12277252	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29848813					SNP	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48392373	NES12277252	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3839336 () rs orientation: forward

Symbol	Name	Function Class
D18Mit66	DNA segment, Chr 18, Massachusetts Institute of Technology 66	1608 bp proximal
Rr533156	regulatory region 533156	77 bp proximal
Rr533157	regulatory region 533157	1370 bp proximal