rs29848807 SNP Detail

Summary

• ID
  rs29848807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3841291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTTTTG TTTTCTTAGG
  CCTGTAGACC AAGCTGGTCT TGACCTTGAA GTCTTGCTTT GTCTCCCAAG TGTGGGTATT
  CCAGGTGCTT CCTACTGTAG AAACATTTCC TTTCCAGGCA TTCTTCCTGT CTGAGAGCAC
  CATCCTCTTC CCTTTCCTCC CAGTCGGTTG GCTCAGGCCC ATGTTTCTTT AAATGCTAAT
  Y
  GGACCACCTT TATACCAGTT TTTTCTACTT AAACTGCTGT CAAAGAGGAC CAAATATATG
  TTGAAGATTC CCATCTTAAA CAGTTTTACT GTTCATGAGC CAGACATGTT ATCTTCCATT
  GTGTGATTAA CTGTTGAGAG TGATTTAGGA CCAAGTAACT TCAGGATGGC GTGGTCTACT
  TCCTACTTGT ATTCTAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48392367	NES12277163	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29848807					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48392367	NES12277163	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3841291 () rs orientation: forward

Symbol	Name	Function Class
D18Mit66	DNA segment, Chr 18, Massachusetts Institute of Technology 66	188 bp distal
Rr533156	regulatory region 533156	980 bp distal
Rr533157	regulatory region 533157	within coordinates