rs29848804 SNP Detail

Summary

• ID
  rs29848804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:3841676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTATTC TAGATGCAGT
  CTGTTCTTTT CTGGAGAAAA AAAAACAGTA ATGAACACAA GTACAAAAGA AAATGTCGGT
  TTATAGAAGC AAATATTTCA GAGATTGATG GCTACTATAT TTAAGTTCTT CTCATGTGAT
  CATAAAGAGG ACCAGGAAGT TGTAAAGAGA TATATAAGGA ATTCTGGTGC CTCTTCTCTG
  Y
  TTGTCCAGAA ATCATCTTGC CTGACAATAG CAACACTATC AGAACAATTC TATCAGGGGT
  TTAAGACCAA CTTCTGCCAT AGTGGGAGTT AGAGACCCAC CTAGGTCACG CTGACCTTCC
  TCAAACAAAC CAAATCAAGC AACTGCCTTC AAAAACCCTC AAGTTAGAAA ACAGGTAATG
  ACATAACTTA AAGTTCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48392364	NES12277168	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29848804					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48392364	NES12277168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:3841676 () rs orientation: forward

Symbol	Name	Function Class
D18Mit66	DNA segment, Chr 18, Massachusetts Institute of Technology 66	573 bp distal
Rr533156	regulatory region 533156	1365 bp distal
Rr533157	regulatory region 533157	361 bp distal