rs29846440 SNP Detail

Summary

• ID
  rs29846440
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31068376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATATAC AACAAAATGC
  TGTCCTCCTT GATAGCATGT TTAGTCATGG GAGACACTAG AAACTCTGTA TACTTTATGT
  GTGTTTATAT ACATATATGT ATGTATATGT GTTTATGTGT GTGTGTGTGT GTGATCACTT
  TATTTTAACT GAAGAATAAA GATTAACATC ATGTATTTAA ATGGACTAAA TTATTTTTTT
  W
  AAAGATTTGC TTAAAACACT TAGATTTACT TTATTTTATG TGTATAAGAG TATATTTGCC
  TGCATGTATG TATGTGTATC ATGTGCAGGC CTGGAGGTCA GACATCAGCT TTCCCTGGAA
  CTAGATTGTA AAGATAATCA TGTGGTTGTT GGGCACTGAA CCCAAGTCCT TTGCAAGAGC
  AACAAGTGCT CCCTGCTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572976	NES12884065	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29846440					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572976	NES12884065	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31068376 () rs orientation: forward

Symbol	Name	Function Class
Prkci	protein kinase C, iota	Intron
Rr374764	regulatory region 374764	1601 bp upstream
Rr574854	regulatory region 574854	1626 bp proximal
Rr574855	regulatory region 574855	1665 bp proximal