rs29846438 SNP Detail

Summary

• ID
  rs29846438
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31068848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAAGAGG CCAGAGGCAT
  CAGATCGCCT GGGATTAGTT ACTGGCAGCT TTGAGTCATG GGAAACCAAC CTGAGTCCTC
  TGGAAGAGCA GCAAGTGCTC TTAACCACAG AGCCATGGCT CCATGCCCAA AACTAAGGTT
  TTAAATCAAG GATTAAATTA TTCACTAGCC AGGCTCTTAA AAACAGAGCT GTATCCATTG
  M
  GCTTTTTGTT GACAAATATA AATATAAATC TTTTATATAC TGTAGTGGTC TAAATATTTG
  TGTCCATCCC CCACCCCCAG TCCCAGCATT TATTGTAGAA ATTGACATAA AATGTCTTAG
  AAGGTGAAGG GTCTACTGGA AGTTGCATTG GCTCTCATGA ATGGGATTAG TACCTGTGTG
  GAATGGCGCA GCTAAGGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572974	NES12884061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29846438					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572974	NES12884061	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31068848 () rs orientation: forward

Symbol	Name	Function Class
Prkci	protein kinase C, iota	Intron
Rr374764	regulatory region 374764	1129 bp upstream
Rr574854	regulatory region 574854	1154 bp proximal
Rr574855	regulatory region 574855	1193 bp proximal