rs29846436 SNP Detail

Summary

• ID
  rs29846436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31069250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGAGGA CACAACTAGA
  AGCTGCAAGT CTTTCAAACA GAAGGTAGCT AAGGCGCTTT CATCTTGGAC TTGTCTCCAG
  ATAGACATAA TAAACTCATT CTTGTTGTTT GTGAGTATTG CATGTGTGGA GTTTATTAAA
  CCAGAGAACT AAGCATTGCC TGGCATCTGC TGTGGAAAGG CATGGTGCAG GGTATGAGCG
  Y
  GGCATGGGTG AGTGCTCCTA TGATTGACAG TTATGGAGGA GAAGGGAAGG GAGGGGGCTT
  TGAGAGTCTG TCTGTGCTTC CGTAGCAATA TTACAGAAAG CATAAGCTAT GCCGGACAGT
  AGTGTCTCAG TTCGGAAGCT GGAAGGTATG GCACCAACGG GTTTGCTATC TAGTTAAAGG
  CCTTATTTCT CTGTGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572972	NES12884024	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29846436					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572972	NES12884024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31069250 () rs orientation: forward

Symbol	Name	Function Class
Prkci	protein kinase C, iota	Intron
Rr374764	regulatory region 374764	727 bp upstream
Rr574854	regulatory region 574854	752 bp proximal
Rr574855	regulatory region 574855	791 bp proximal