rs29846434 SNP Detail

Summary

• ID
  rs29846434
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31069519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGTGCT TCCGTAGCAA
  TATTACAGAA AGCATAAGCT ATGCCGGACA GTAGTGTCTC AGTTCGGAAG CTGGAAGGTA
  TGGCACCAAC GGGTTTGCTA TCTAGTTAAA GGCCTTATTT CTCTGTGCAG GACAGCACTG
  GCTTGCTCTG TTTTCCAGTG AAAGAGATAT CCTCACATTA GTGGTAGGCA CAGAGGATGT
  K
  TAGGATAGCT GGGTGAGTAA GGTGTACTTC AGGGTTAATC TGTATGGAGT TTTCTTTTGG
  TGTTTTGTCT TGCTGGTTTT TGGTCTTGAT TTTTGGGGTT TTTTTTTGTG GTTGTTTGAG
  GAGGGGTGGG AAACTTAAAG AGCATGACAT TAGGTGGGAA GGATCTAGGG GAGAGGAAAC
  ATGATCCAGG TATAGTGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49572970	NES12884008	PERLEGEN	MM_PANEL2	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs29846434					SNP	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572970	NES12884008	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31069519 () rs orientation: forward

Symbol	Name	Function Class
Prkci	protein kinase C, iota	Intron
Rr374764	regulatory region 374764	458 bp upstream
Rr574854	regulatory region 574854	483 bp proximal
Rr574855	regulatory region 574855	522 bp proximal