rs29846113 SNP Detail

Summary

• ID
  rs29846113
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31069738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGGGGTG GGAAACTTAA AGAGCATGAC ATTAGGTGGG
  AAGGATCTAG GGGAGAGGAA ACATGATCCA GGTATAGTGT AAGGAGAACT TTTGTTGTTC
  K
  TGTTTCTTTG ATTGAAAATA GACCCTTTAA CAAGGTACTT AGATTATAGT CCGGCCCCCC
  CCCCCCCCGT TCTTTCCTCC TTTTATCCAG ATCCATAGCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49572969	NES12884009	PERLEGEN	MM_PANEL2	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs29846113					SNP	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572969	NES12884009	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31069738 () rs orientation: forward

Symbol	Name	Function Class
Prkci	protein kinase C, iota	Intron
Rr374764	regulatory region 374764	239 bp upstream
Rr574854	regulatory region 574854	264 bp proximal
Rr574855	regulatory region 574855	303 bp proximal