rs29846112 SNP Detail

Summary

• ID
  rs29846112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31070783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATAAAG ACGGGAGAGT
  AAGTGTTTAG ACTACTAGCT GGATTGCCAA GAAGCAAGCA CATTGTTAGG GAAGCCATGG
  CGAGAGGCGT GCGTGTGACC GTCCCTGAAG AGGCAATCCA GTTTCTCTGT CCTCTTGGCT
  ATCTGCTTAC CTTCTGTAGC TCCTGAAGAC TACAGGCAGC TGTCGCTTCT TTGGCAGAGA
  R
  CACGTGGCAG CTCTGCGGTT CCTTGGAGGC ATCAGTAGGC CTCAACTGCC CAAGTCTGTT
  TTTCACGTTT CCTTTCTGTC GTCATTTCCT CCCTTTCACC AGTGAACAGG CATCTATTGT
  GTGAGTGAGA GAGAGTTCCT GGAAAGAGCA GTACCTTCCA CCACACCTTC TGCAAGCCTG
  TTAATTATTG GTGACCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49572968	NES12884003	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs29846112					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572968	NES12884003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31070783 () rs orientation: forward

Symbol	Name	Function Class
Prkci	protein kinase C, iota	Intron
Rr374764	regulatory region 374764	within coordinates
Rr574854	regulatory region 574854	within coordinates
Rr574855	regulatory region 574855	721 bp distal
Tssr28702	transcription start site region 28702	1261 bp upstream