rs29844342 SNP Detail

Summary

• ID
  rs29844342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32791123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC TGTGAAGCTC GCAGGAACGG
  R
  CCGCTGCCCT CACTCAATAT GGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46419111	mCV23289568	ABI	CRAMUS_MOUSE	f	SNP		A	G						A
ss46887220	NES10816329	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	G	A	A	A		G	G	A	G		G
ss134751516	ENSMUSSNP783980	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss320698805	CHEV_3_32635896	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29844342					SNP	A	A	G	A	G	A	G	G	A	A	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887220	NES10816329	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32791123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	within coordinates
Gm9859	predicted gene 9859	within coordinates
Mrpl47	mitochondrial ribosomal protein L47	mRNA-UTR
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	83 bp upstream
Rr367422	regulatory region 367422	within coordinates
Rr575021	regulatory region 575021	within coordinates
Rr575022	regulatory region 575022	163 bp proximal
Rr575023	regulatory region 575023	225 bp proximal
Tssr28770	transcription start site region 28770	71 bp upstream
Tssr32937	transcription start site region 32937	197 bp upstream
Tssr32938	transcription start site region 32938	192 bp upstream