rs29843967 SNP Detail

Summary

• ID
  rs29843967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32880099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCACAG CACATGGATG
  GAGGAGGATC CCTGGCCAGG GTCTGGGTAA TGGAGTGTGT CAAAGGTGAC CATGAAGAAG
  ATGAGATGGG ATATACAAGT GGGCTTTGAG TTTGTACAGC CTGGGAAGTT AGGAAGCAGG
  GACTTCAGAG GTCAGGGGAT GTGGTAGTGC CTAGTTTGAG TACTTTAGAC TTGTGAGGGA
  Y
  TGGCAACCAC CTCTGTGCTC CTTGAATCAT GTCACTTGTT TCTTGGAGGA AACAGTGCCC
  ATTGTATCCT TGTCCCCTTT TCTCTGACTG GCTCAAGCTC AGAGAACCTT AGGCAGGAGC
  CTGGGCTAGT GCTTTCTCTA GAAGTTAGAC ATGTGAATAG GCTATGGTGT ACCCAGCTGT
  TCTGGGCAGA ATACATGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888108	NES10812106	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29843967					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888108	NES10812106	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32880099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575029	regulatory region 575029			707 bp distal
Rr575030	regulatory region 575030			806 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant