rs29843964 SNP Detail

Summary

• ID
  rs29843964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32880055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGTGAGA ATGGAGCTTG
  AGGAAGCAGG TAATGACCCA GTGGAGTCCC ACAGCACATG GATGGAGGAG GATCCCTGGC
  CAGGGTCTGG GTAATGGAGT GTGTCAAAGG TGACCATGAA GAAGATGAGA TGGGATATAC
  AAGTGGGCTT TGAGTTTGTA CAGCCTGGGA AGTTAGGAAG CAGGGACTTC AGAGGTCAGG
  R
  GATGTGGTAG TGCCTAGTTT GAGTACTTTA GACTTGTGAG GGACTGGCAA CCACCTCTGT
  GCTCCTTGAA TCATGTCACT TGTTTCTTGG AGGAAACAGT GCCCATTGTA TCCTTGTCCC
  CTTTTCTCTG ACTGGCTCAA GCTCAGAGAA CCTTAGGCAG GAGCCTGGGC TAGTGCTTTC
  TCTAGAAGTT AGACATGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888105	NES10812105	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29843964					SNP	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888105	NES10812105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32880055 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575029	regulatory region 575029			663 bp distal
Rr575030	regulatory region 575030			850 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant