rs29843463 SNP Detail

Summary

• ID
  rs29843463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32873425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTATG CTATTCCGGT
  TGATCTGGGG ATCAAACCTA ACTAATTTGT TAATTATTTA TTTTTCATAT CTTTAAAAAA
  GACCCGGGTA GAGTGGAATG AAAGATTACA TTTAACAGTT GGCACGCTTT GAACACATTA
  CTCCCGGTGA CTGTCAGCAC GCCATTGCAT CCCATCCCCT ACAACACTCT TGGAAAGACC
  R
  TTTTCAGGTT GTGTGGACCC TGTTGGGTAG GCTACATGAA CCCCCTCCCC CAGGGTGGGG
  CATGGCTAGT GTCTTAAGCT GTGGACAGAC TACAGACACT GGAAGGTGGC TTAACTCCTC
  AGGACACATG TACTGGCTAG TTTTGTGTCA ACTTGACACA GGCTGGAGTT ATCATAAGAA
  AAGGAGCTCC AGTTGAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888003	NES10812644	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29843463					SNP	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888003	NES10812644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32873425 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13063	CpG island 13063			1032 bp distal
Rr575026	regulatory region 575026			1695 bp distal
Rr575027	regulatory region 575027			1346 bp distal
Tssr28771	transcription start site region 28771			1700 bp downstream
Tssr28772	transcription start site region 28772			1671 bp downstream
Tssr28773	transcription start site region 28773			1639 bp downstream
Tssr28774	transcription start site region 28774			1615 bp downstream
Tssr28775	transcription start site region 28775			930 bp downstream
Tssr28776	transcription start site region 28776			922 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant