rs29843460 SNP Detail

Summary

• ID
  rs29843460
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32872375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCTGC GGACGAAGAC
  TGGGTTCCCT GGGCCCTTCG CTCCGCTAGC CTGTGGCTAG GATGCCAGGG CCCCAGTCGT
  CAGTATTCTG CCCAAAGCCC CAGTATCGAG AAAGGCAAGC AAGAGTTAGT CCAGGGTTCT
  GAGCTGTTCT CGCGGGCGAC AGAGGGTGGG GACGTGGTAG GTGAGAGTCC CCTAGCCCGC
  S
  GCACGCTCAG TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCCTTT CTCTCCCTCT CCTAGAAGCC TTTTTTTTTT TTTTTTTTTT TTTTTTTTGC
  CCAGGGTTTC CCACTGCGGG ACAATGCTGA TGGACTCTGA GCTCGCCTCT CTCTCCATTT
  CCCATCCCAT TCCTTTCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888000	NES10812793	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29843460					SNP	G	G	G	G	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888000	NES10812793	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32872375 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13063	CpG island 13063			within coordinates
Rr575026	regulatory region 575026			645 bp distal
Rr575027	regulatory region 575027			296 bp distal
Tssr28771	transcription start site region 28771			650 bp downstream
Tssr28772	transcription start site region 28772			621 bp downstream
Tssr28773	transcription start site region 28773			589 bp downstream
Tssr28774	transcription start site region 28774			565 bp downstream
Tssr28775	transcription start site region 28775			119 bp upstream
Tssr28776	transcription start site region 28776			1972 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant