rs29843457 SNP Detail

Summary

• ID
  rs29843457
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32872182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTACAAG AACGAGTGCG
  CCTTCTCCTA CGACTCCCCG GTAAGGAAGA TCCACGGCGC AGTTGCGCAG CCAGCCTGGG
  AAACGGGGTG GCGCACAGGG CAGGGGACCC GATGAGCTGC GGGCCCGGGA CTTTTTCCTC
  CTCCTGCTGC CTCTCCTCCA GCTTTGGCTC CCTGGCACCA AGTGAGCGCC TCCAGGCTGC
  K
  GCGGACGAAG ACTGGGTTCC CTGGGCCCTT CGCTCCGCTA GCCTGTGGCT AGGATGCCAG
  GGCCCCAGTC GTCAGTATTC TGCCCAAAGC CCCAGTATCG AGAAAGGCAA GCAAGAGTTA
  GTCCAGGGTT CTGAGCTGTT CTCGCGGGCG ACAGAGGGTG GGGACGTGGT AGGTGAGAGT
  CCCCTAGCCC GCGGCACGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46887997	NES10812791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29843457					SNP	T	T	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887997	NES10812791	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32872182 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13063	CpG island 13063			within coordinates
Rr575026	regulatory region 575026			452 bp distal
Rr575027	regulatory region 575027			103 bp distal
Tssr28771	transcription start site region 28771			457 bp downstream
Tssr28772	transcription start site region 28772			428 bp downstream
Tssr28773	transcription start site region 28773			396 bp downstream
Tssr28774	transcription start site region 28774			372 bp downstream
Tssr28775	transcription start site region 28775			312 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant