rs29843407 SNP Detail

Summary

• ID
  rs29843407
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32790600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCCTGT TGGCAAGTGT
  CAGTGAAGAG TAAGCTGTCA TTCTCACACT CGCAGACGCA GCTTCTGTTG CCGTAGCTAC
  GCTCATCACT TAACATCTGC CGGACAATCT GTGTACAAAG ACGCCGAGGG AAGCCTTCCG
  TTCACAGCTC AGGACTCCTC GGAAACCTCC CTCCCAACCG ACCCAGCCCC AGGACACTGC
  S
  AGTCCGAGGA AGCACCGAGC AGCGGATGCT CCCACCGCCC GCGGCGACAG AACGCAGGAG
  GACTAGTGCG CCAGGATAGG CGACTGCAAG GTCACGCTCT CTGCCTCCGC GGTGGCCTGT
  CTAGAGCTCT GTTGCATCCT GCAAGAAGCG CCCAAAGGCG GAGGCAGTCA TTTCTTCTCT
  CACCACTTAC CCCGAGTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46887205	NES10816317	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29843407					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887205	NES10816317	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32790600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	within coordinates
Gm9859	predicted gene 9859	within coordinates
Mrpl47	mitochondrial ribosomal protein L47	Intron
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	606 bp upstream
Rr367422	regulatory region 367422	335 bp upstream
Rr575021	regulatory region 575021	49 bp proximal
Rr575022	regulatory region 575022	686 bp proximal
Rr575023	regulatory region 575023	748 bp proximal
Tssr28770	transcription start site region 28770	594 bp upstream
Tssr32937	transcription start site region 32937	292 bp downstream
Tssr32938	transcription start site region 32938	328 bp downstream