rs29842571 SNP Detail

Summary

• ID
  rs29842571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32871771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GCCGAGCCTC CCGAGCCTAA
  R
  CTGATCCTCA GCCCGCGCGA CCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45494868	mCV24288384	ABI	CRAMUS_MOUSE	f	SNP		G			A
ss46887991	NES10812785	PERLEGEN	MM_PANEL2	f	SNP	G		A	G		G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29842571					SNP	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887991	NES10812785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32871771 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13063	CpG island 13063			within coordinates
Rr575026	regulatory region 575026			41 bp distal
Rr575027	regulatory region 575027			287 bp proximal
Tssr28771	transcription start site region 28771			46 bp downstream
Tssr28772	transcription start site region 28772			17 bp downstream
Tssr28773	transcription start site region 28773			within coordinates
Tssr28774	transcription start site region 28774			20 bp upstream
Tssr28775	transcription start site region 28775			723 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			mRNA-UTR
				Noncoding-Transcript-Variant