rs29842565 SNP Detail

Summary

• ID
  rs29842565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32871227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC AGGCTACCGA ATGTTCGAGA
  R
  GGGCCTTGAG TCATAGGACG GCATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss45551787	mCV24288374	ABI	CRAMUS_MOUSE	f	SNP	G				A	G
ss46887985	NES10812782	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G			G		G	G
ss134751837	ENSMUSSNP2816687	ENSEMBL	ENSEMBL_Sanger	f	SNP						G
ss320698847	CHEV_3_32716000	CHEVERUD	SCREENING_POP	f	SNP								G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs29842565					SNP	G	G	A	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887985	NES10812782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32871227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13063	CpG island 13063	197 bp proximal
Rr575026	regulatory region 575026	within coordinates
Rr575027	regulatory region 575027	831 bp proximal
Tssr28771	transcription start site region 28771	442 bp upstream
Tssr28772	transcription start site region 28772	504 bp upstream
Tssr28773	transcription start site region 28773	528 bp upstream
Tssr28774	transcription start site region 28774	564 bp upstream
Tssr28775	transcription start site region 28775	1267 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)	Noncoding-Transcript-Variant