rs29842470 SNP Detail

Summary

• ID
  rs29842470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30069000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAAGGA AGCAGGTGAC
  AGTAAATGAC TAGAGGTGGT GACTAATTCA TTTTGGTGGC CTGTTATCTA TGACACTGAA
  CTGTTATTTC AGATAATGGC CATTGTTTGG CGGGGGGGGG GGGGGGGGGG AGGGAGATCT
  CACAGCAGTA GTAGGTAAGA CAGGGGAAAA ATCCTTTGTA AATAACCTAA GCATTGAGAT
  R
  TTCCCATAGA GCCCTGCCTG AGAATCATGA GGAGTCTGGG CTTCCCTGCA TTGATCTTAG
  GCCCTTCCTC AACTTGCCCA TTGTTGAAGT GCTCTTTTTC TTTTACTTTT TTTTTTTTTT
  TTAATTTAGC CATAAATTGG AATAGCTGGA GCTATGAGCT GTTCTATTTT CTTCCTGTCA
  GGATGAGAGA TTTGTTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886422	NES10819067	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29842470					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886422	NES10819067	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30069000 () rs orientation: forward

Symbol	Name	Function Class
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	1247 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	1126 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	1376 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574702	regulatory region 574702	1706 bp distal
Rr574703	regulatory region 574703	1110 bp distal
Rr574704	regulatory region 574704	312 bp proximal
Rr574705	regulatory region 574705	577 bp proximal
Rr574706	regulatory region 574706	1780 bp proximal
Tssr32873	transcription start site region 32873	1940 bp upstream
Tssr32874	transcription start site region 32874	1831 bp upstream
Tssr32875	transcription start site region 32875	1815 bp upstream
Tssr32876	transcription start site region 32876	1702 bp upstream
Tssr32877	transcription start site region 32877	1677 bp upstream
Tssr32878	transcription start site region 32878	1605 bp upstream
Tssr32879	transcription start site region 32879	1591 bp upstream
Tssr32880	transcription start site region 32880	1511 bp upstream
Tssr32881	transcription start site region 32881	1482 bp upstream
Tssr32882	transcription start site region 32882	1452 bp upstream
Tssr32883	transcription start site region 32883	461 bp upstream