rs29842428 SNP Detail

Summary

• ID
  rs29842428
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32790515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGCTAA TTTGCAAAGT
  TAGTGTAATA ATATAGAAGA GACTGCTTCC TTCAATTAAT CTGCTCTCTA CTATTTCTAA
  AACTCGGCTC CCTGTTGGCA AGTGTCAGTG AAGAGTAAGC TGTCATTCTC ACACTCGCAG
  ACGCAGCTTC TGTTGCCGTA GCTACGCTCA TCACTTAACA TCTGCCGGAC AATCTGTGTA
  M
  AAAGACGCCG AGGGAAGCCT TCCGTTCACA GCTCAGGACT CCTCGGAAAC CTCCCTCCCA
  ACCGACCCAG CCCCAGGACA CTGCGAGTCC GAGGAAGCAC CGAGCAGCGG ATGCTCCCAC
  CGCCCGCGGC GACAGAACGC AGGAGGACTA GTGCGCCAGG ATAGGCGACT GCAAGGTCAC
  GCTCTCTGCC TCCGCGGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46887196	NES10816314	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29842428					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887196	NES10816314	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32790515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	within coordinates
Gm9859	predicted gene 9859	within coordinates
Mrpl47	mitochondrial ribosomal protein L47	Intron
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	691 bp upstream
Rr367422	regulatory region 367422	420 bp upstream
Rr575021	regulatory region 575021	134 bp proximal
Rr575022	regulatory region 575022	771 bp proximal
Rr575023	regulatory region 575023	833 bp proximal
Tssr28770	transcription start site region 28770	679 bp upstream
Tssr32937	transcription start site region 32937	377 bp downstream
Tssr32938	transcription start site region 32938	413 bp downstream