rs29842425 SNP Detail

Summary

• ID
  rs29842425
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32790320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA ACTCTGCAAG GTTTTAAAAA
  K
  CTAATTTGCA AAGTTAGTGT AATAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46436779	mCV23289567	ABI	CRAMUS_MOUSE	f	SNP		T	G					G		T
ss46887193	NES10816313	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G		G	T	T	T		G	G	T	G		G
ss134751513	ENSMUSSNP4326639	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							T
ss320698804	CHEV_3_32635093	CHEVERUD	SCREENING_POP	f	SNP													G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29842425					SNP	T	T	G	T	G	T	G	G	G	T	T	T	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887193	NES10816313	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32790320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	79 bp proximal
Gm9859	predicted gene 9859	within coordinates
Mrpl47	mitochondrial ribosomal protein L47	Intron
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	886 bp upstream
Rr367422	regulatory region 367422	615 bp upstream
Rr575021	regulatory region 575021	329 bp proximal
Rr575022	regulatory region 575022	966 bp proximal
Rr575023	regulatory region 575023	1028 bp proximal
Tssr28770	transcription start site region 28770	874 bp upstream
Tssr32937	transcription start site region 32937	572 bp downstream
Tssr32938	transcription start site region 32938	608 bp downstream