rs29842196 SNP Detail

Summary

• ID
  rs29842196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30075070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTACTG ATTGGTATCA
  GCTGGGTCCA AAGCCTTTCT CCTTCACTGG GCTTCTCTCC TGGATTAAAG CCAGCTCCCG
  TAGCAGGTTT GCCCTTAAGA AGCACCATGA TTTAGAAGAT GGAGCCACTC ACACGGCTAC
  CTTCAGTTGG TGTCTTTTCA CAGTAAACTA CACTAAACTT GTACGTCTTT GTGAGAGTAA
  Y
  TATGATAAAA CATGAGGACA CATTTGAAAG AACGCCATCC TTGGCTGGTT GATATTGGCT
  GGTTGATGCT GCCCCCCCCC AGCCCCCTCC CCCAACCCAG AGGAATCAGT TGATACATAT
  TGATACATAG CTCATTGTCT GTGGACTCGG CCACAAACAT GTCTTCCATT TTTGTTGTTT
  TAGAGTAGAA TCCTGGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886509	NES10818798	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29842196					SNP	C	T	C	C	C	T	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886509	NES10818798	PERLEGEN	MM_PANEL	f	SNP	C/T
ss134728288	ENSMUSSNP3409652	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30075070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			within coordinates
Rr574708	regulatory region 574708			1083 bp distal
Rr574709	regulatory region 574709			629 bp distal