rs29841660 SNP Detail

Summary

• ID
  rs29841660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30068316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCTCTCT CACAAATAGA
  TTGTAGTAGA TTGAGAATAT TTTCTAAGTT ATTCAAAAGG CCATGACTTC CCCAGAGTCA
  AGTTATGCAA GTGGTTGCTT TTAGTGATTC ATATTTTATA TATTAGATAA CTTTATAATA
  AGTTTGGGCA CTTTCTATCA ATACAATGCA GAGATGACAT TGGGTGAAAG AATTTGGATA
  R
  AGGATGGCAA AATATAAGAA TCCATGTGTT TATTTGTAGA TAAATTTGGA AAAAAAAATG
  TTAAACCCAC CGCTTAATTG AGAATAAATG CTTTTGATGA GAAAACTCCA TTTATAAAAG
  CAAATAGAAA GATACAGCTC ACCTACCCAC CAAGAGAAGA CAGAAACACC TCCAGGACAA
  CCACCCCCAA CCCCCACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46886410	NES10819062	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29841660					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886410	NES10819062	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30068316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	1574 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	563 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	442 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	692 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574701	regulatory region 574701	1778 bp distal
Rr574702	regulatory region 574702	1022 bp distal
Rr574703	regulatory region 574703	426 bp distal
Rr574704	regulatory region 574704	996 bp proximal
Rr574705	regulatory region 574705	1261 bp proximal
Tssr28678	transcription start site region 28678	1958 bp downstream
Tssr32873	transcription start site region 32873	1256 bp upstream
Tssr32874	transcription start site region 32874	1147 bp upstream
Tssr32875	transcription start site region 32875	1131 bp upstream
Tssr32876	transcription start site region 32876	1018 bp upstream
Tssr32877	transcription start site region 32877	993 bp upstream
Tssr32878	transcription start site region 32878	921 bp upstream
Tssr32879	transcription start site region 32879	907 bp upstream
Tssr32880	transcription start site region 32880	827 bp upstream
Tssr32881	transcription start site region 32881	798 bp upstream
Tssr32882	transcription start site region 32882	768 bp upstream
Tssr32883	transcription start site region 32883	220 bp downstream