rs29841657 SNP Detail

Summary

• ID
  rs29841657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30067876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGTCTGTGT TAGAGTTGGG TGGGGGATGG
  GAAAGATAGG GTGGAGAATT GCTTTCAGGG GTGTGAGGGT GCCTCCCCAG GCAGGCTGGT
  AGTTTGGAAG CTCTGAAGAG GGCCAGGGCA ACTCTTAGGA TAAAGAGATA CTGGCTCGCA
  Y
  TAAAAGTCTC AAGACAGCAG CTTCAAAAGT GAAAACTAAC ACACATTTCC AGTTTCCAGT
  TAAGCATATT TTAAAATAAA ATATAATTTA AGTTTCTACT TAAATTTATT CCTTTCCTTT
  TTATAGTTAG GTCCCCAGAA ATGTGTACAT TTTAAAAATA CCCCTACACA CACACACACA
  CACACACACA CACACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886407	NES10819061	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29841657					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886407	NES10819061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30067876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	1134 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	123 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	2 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	252 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574701	regulatory region 574701	1338 bp distal
Rr574702	regulatory region 574702	582 bp distal
Rr574703	regulatory region 574703	within coordinates
Rr574704	regulatory region 574704	1436 bp proximal
Rr574705	regulatory region 574705	1701 bp proximal
Tssr28678	transcription start site region 28678	1518 bp downstream
Tssr32873	transcription start site region 32873	816 bp upstream
Tssr32874	transcription start site region 32874	707 bp upstream
Tssr32875	transcription start site region 32875	691 bp upstream
Tssr32876	transcription start site region 32876	578 bp upstream
Tssr32877	transcription start site region 32877	553 bp upstream
Tssr32878	transcription start site region 32878	481 bp upstream
Tssr32879	transcription start site region 32879	467 bp upstream
Tssr32880	transcription start site region 32880	387 bp upstream
Tssr32881	transcription start site region 32881	358 bp upstream
Tssr32882	transcription start site region 32882	328 bp upstream
Tssr32883	transcription start site region 32883	660 bp downstream