rs29841654 SNP Detail

Summary

• ID
  rs29841654
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30067873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA GGATAAAGAG ATACTGGCTC
  S
  CATTAAAAGT CTCAAGACAG CAGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45561600	mCV22689456	ABI	CRAMUS_MOUSE	f	SNP		C					G		G
ss46886404	NES10819060	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	C		G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29841654					SNP	G	C	G	G	G	C	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886404	NES10819060	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30067873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	1131 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	120 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	within coordinates
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	249 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574701	regulatory region 574701	1335 bp distal
Rr574702	regulatory region 574702	579 bp distal
Rr574703	regulatory region 574703	within coordinates
Rr574704	regulatory region 574704	1439 bp proximal
Rr574705	regulatory region 574705	1704 bp proximal
Tssr28678	transcription start site region 28678	1515 bp downstream
Tssr32873	transcription start site region 32873	813 bp upstream
Tssr32874	transcription start site region 32874	704 bp upstream
Tssr32875	transcription start site region 32875	688 bp upstream
Tssr32876	transcription start site region 32876	575 bp upstream
Tssr32877	transcription start site region 32877	550 bp upstream
Tssr32878	transcription start site region 32878	478 bp upstream
Tssr32879	transcription start site region 32879	464 bp upstream
Tssr32880	transcription start site region 32880	384 bp upstream
Tssr32881	transcription start site region 32881	355 bp upstream
Tssr32882	transcription start site region 32882	325 bp upstream
Tssr32883	transcription start site region 32883	663 bp downstream