rs29841632 SNP Detail

Summary

• ID
  rs29841632
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32870875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTTAAA TCAACTTTCT
  TTCTGTAGCC AGTTTGTGAA CAGGCAGAGA TCCTACTAGA TAGGGAGGAA GCCAAGTGTA
  ATGTGTGTAA TTCTTTGCTC TGAAGCAATG TGAGGCAGAG ACATTTAGTG ACATCACCAG
  CGACTTTCAG GATAGTCTTA TCTGGAGAGA CTTACAGAAT GCTTTGGATC TGCACCTTCT
  S
  GCTGTCACGA AGAGCTATGC CCTGGTAGTA GGATACACAT AGTTAGGGAA CCTCAGTGGA
  ATAGCCGATG TAGGATGGGT GGGTATTTAC TTATTTATTT TAAAGACAGC ATCTCATGTA
  GCTAAGCCAA GGCTAATTTT GAGCTCCTGT ACCTGTTTCC ACCTCCTCAT TCCATGGGTT
  ATTTATTTAT TTACTTTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46887982	NES10812779	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29841632					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887982	NES10812779	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32870875 () rs orientation: forward

Symbol	Name	Function Class
Rr575026	regulatory region 575026	330 bp proximal
Rr575027	regulatory region 575027	1183 bp proximal
Tssr28771	transcription start site region 28771	794 bp upstream
Tssr28772	transcription start site region 28772	856 bp upstream
Tssr28773	transcription start site region 28773	880 bp upstream
Tssr28774	transcription start site region 28774	916 bp upstream
Tssr28775	transcription start site region 28775	1619 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)	Noncoding-Transcript-Variant