rs29841629 SNP Detail

Summary

• ID
  rs29841629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32870855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGGATAT TAAGCTTTCA
  ACATTTTAAA TCAACTTTCT TTCTGTAGCC AGTTTGTGAA CAGGCAGAGA TCCTACTAGA
  TAGGGAGGAA GCCAAGTGTA ATGTGTGTAA TTCTTTGCTC TGAAGCAATG TGAGGCAGAG
  ACATTTAGTG ACATCACCAG CGACTTTCAG GATAGTCTTA TCTGGAGAGA CTTACAGAAT
  R
  CTTTGGATCT GCACCTTCTC GCTGTCACGA AGAGCTATGC CCTGGTAGTA GGATACACAT
  AGTTAGGGAA CCTCAGTGGA ATAGCCGATG TAGGATGGGT GGGTATTTAC TTATTTATTT
  TAAAGACAGC ATCTCATGTA GCTAAGCCAA GGCTAATTTT GAGCTCCTGT ACCTGTTTCC
  ACCTCCTCAT TCCATGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46887979	NES10812776	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29841629					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887979	NES10812776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32870855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13063	CpG island 13063	569 bp proximal
Rr575026	regulatory region 575026	350 bp proximal
Rr575027	regulatory region 575027	1203 bp proximal
Tssr28771	transcription start site region 28771	814 bp upstream
Tssr28772	transcription start site region 28772	876 bp upstream
Tssr28773	transcription start site region 28773	900 bp upstream
Tssr28774	transcription start site region 28774	936 bp upstream
Tssr28775	transcription start site region 28775	1639 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)	Noncoding-Transcript-Variant