rs29841626 SNP Detail

Summary

• ID
  rs29841626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32870814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA GACATTTAGT GACATCACCA
  R
  CGACTTTCAG GATAGTCTTA TCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45434062	mCV24288372	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss46887976	NES10812771	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	G		G	G	G	A	G	A	A
ss134751834	ENSMUSSNP6220371	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G							G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29841626					SNP	A	G	G	G	A	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887976	NES10812771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32870814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13063	CpG island 13063	610 bp proximal
Rr575026	regulatory region 575026	391 bp proximal
Rr575027	regulatory region 575027	1244 bp proximal
Tssr28771	transcription start site region 28771	855 bp upstream
Tssr28772	transcription start site region 28772	917 bp upstream
Tssr28773	transcription start site region 28773	941 bp upstream
Tssr28774	transcription start site region 28774	977 bp upstream
Tssr28775	transcription start site region 28775	1680 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)	Noncoding-Transcript-Variant