rs29841474 SNP Detail

Summary

• ID
  rs29841474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32789407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAGGCA TTAAATTTGG
  TATTAAAGAG TTACATTAGT TACATAAACA TACCATGCTT TATAGCTGCA TGAAAATCTT
  ATGCATAATT ATATATATAT TTAGAAATTA TGTTTCTAAG AGCACTTAAT GAACTGATAA
  AATGATCTTA AAACACAATG TAAAATGTTT CACAAGTGCT GTCTTCCAAA CCAAGAGTAT
  Y
  TGACTGGAGT TTATGTTTGT TTTCCTGTGT ACTGAGGATT AAGCCCAGGG CCTCAGGCAT
  GCTAGGTACT CTACCACTGA GCTATGTCCA TGACTCCTGA CTTGAAACTA ATTATGAAGA
  AATAAACAAA GCAAAACAAA ACAAAACAAA ATCCTACCCC AAATTGCCAG TGTGATGACA
  AAGGAAAAAA GAAACACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46887181	NES10816435	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29841474					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887181	NES10816435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32789407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	992 bp proximal
Gm9859	predicted gene 9859	843 bp downstream
Mrpl47	mitochondrial ribosomal protein L47	Intron
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	1799 bp upstream
Rr367422	regulatory region 367422	1528 bp upstream
Rr575021	regulatory region 575021	1242 bp proximal
Rr575022	regulatory region 575022	1879 bp proximal
Rr575023	regulatory region 575023	1941 bp proximal
Tssr28770	transcription start site region 28770	1787 bp upstream
Tssr32937	transcription start site region 32937	1485 bp downstream
Tssr32938	transcription start site region 32938	1521 bp downstream