rs29840798 SNP Detail

Summary

• ID
  rs29840798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30065523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGAAAA ACAATAACGG
  AAGAGAAAGA CAATAATTGC TCCCTCCCCC TCCTTCCATC TCTCCACACT AACAGAGAGT
  TAAATACCCT TTCTATGGAA GACACATTTT AACAAATACG TTACTTATAA AATTCCAGGC
  TCTAAGATGT TCCTTCAGCT CTCAAGGCTG AGCAATGCAA ATGGCCCTGA GATCTCTCCC
  R
  GTCCCAGAAA CAGAGTGAAT AATTAGCACA GATTCTAAAG TCTGCTGCTC TTCTTTAAGT
  GGGATTGTTG TTTTGTTTGG GAATTTATTC TGATTTGGGG TGTATCGTTT GTTTTCTTGA
  CTGAGAAGAA AAGGGGTGGG GAGGCATGTC AACTGACACA CCAAAGAAAT ATTTAATAAA
  GGAAACTGGT GAAGCCGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886398	NES10819346	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29840798					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886398	NES10819346	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30065523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13032	CpG island 13032			882 bp proximal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3			1959 bp proximal
Mecom	MDS1 and EVI1 complex locus			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr574700	regulatory region 574700			486 bp distal
Rr574701	regulatory region 574701			515 bp proximal
Rr574702	regulatory region 574702			1016 bp proximal
Rr574703	regulatory region 574703			1772 bp proximal
Tssr28678	transcription start site region 28678			824 bp upstream
Tssr32873	transcription start site region 32873			1512 bp downstream
Tssr32874	transcription start site region 32874			1630 bp downstream
Tssr32875	transcription start site region 32875			1651 bp downstream
Tssr32876	transcription start site region 32876			1762 bp downstream
Tssr32877	transcription start site region 32877			1783 bp downstream
Tssr32878	transcription start site region 32878			1858 bp downstream
Tssr32879	transcription start site region 32879			1873 bp downstream
Tssr32880	transcription start site region 32880			1953 bp downstream
Tssr32881	transcription start site region 32881			1975 bp downstream