rs29840793 SNP Detail

Summary

• ID
  rs29840793
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32870783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT AATTCTTTGC TCTGAAGCAA
  W
  GTGAGGCAGA GACATTTAGT GACAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45452963	mCV24288362	ABI	CRAMUS_MOUSE	f	SNP		T	A					T		T
ss46887973	NES10812762	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	A		T	T	T	T	T	T	T	T	T
ss134751831	ENSMUSSNP4353609	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29840793					SNP	T	T	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887973	NES10812762	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32870783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13063	CpG island 13063	641 bp proximal
Rr575026	regulatory region 575026	422 bp proximal
Rr575027	regulatory region 575027	1275 bp proximal
Tssr28771	transcription start site region 28771	886 bp upstream
Tssr28772	transcription start site region 28772	948 bp upstream
Tssr28773	transcription start site region 28773	972 bp upstream
Tssr28774	transcription start site region 28774	1008 bp upstream
Tssr28775	transcription start site region 28775	1711 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)	Noncoding-Transcript-Variant