rs29840790 SNP Detail

Summary

• ID
  rs29840790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32870462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCATGCT CCAACAAGTA
  GCCTACCAAG ATGGAATTTA AATGTGGTGT AAGTATCACC CAGGATACCC CTTGGAAAAC
  AATATATACA TATAAAATTA AGATCAGTGT TACTAAATTT CCTTCCAGAA TGCACAGGCC
  TGAAATCCAG CAGTGGGGAA CCAAATGGGG GTGATGGGTT GGACTGGGGC AGGGGGATCA
  Y
  CAGGAGTCAA CATCAACTTG GGATTCAAAG TGACAAAAAT AAAAGTAAAC ACCCTTTCAG
  AGATGTGCAG TTTTTGTTCC CACCAACAAT GTGTTTGAGG GTGTTTCTCA AGCCTGGACT
  AATTTGATAG ATCTTTTATC AGCTGCCAGA TGAGAAACAA ATCTCACCGA TTTGACTTTT
  TGTTTAATTC GAGATTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46887970	NES10812760	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29840790					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887970	NES10812760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32870462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13063	CpG island 13063	962 bp proximal
Rr575026	regulatory region 575026	743 bp proximal
Rr575027	regulatory region 575027	1596 bp proximal
Tssr28771	transcription start site region 28771	1207 bp upstream
Tssr28772	transcription start site region 28772	1269 bp upstream
Tssr28773	transcription start site region 28773	1293 bp upstream
Tssr28774	transcription start site region 28774	1329 bp upstream
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)	Noncoding-Transcript-Variant