rs29840715 SNP Detail

Summary

• ID
  rs29840715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32788817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTTAGC GCATGTGTGT
  GTGAGTACGT GCTTTCACGT GCCATGACAC ACATGTAGCG GTCAGAAGAC AACAGGAGTG
  CTGGTTCTCT TCCACCTCAT GGAGGCACAG TCTTTCTCTT TTATGCTGCT GTGCTGAGTA
  TTCAGGATAG CAGGCCTGAG AGCTTTTATG TTGCTGTGCT GAGTACTCAG GATAGCGGGC
  Y
  TGAGAGCTTT TGAGTGCTTC CTCCTCCTCT CCCTCCCGTC TGGGCCCAGG AATTCGGGAA
  TTGGATGGAG ATGCGCCCAG TCACTGCGCC CAGTTTTTAC TGCTTAGCTT CCTTGGCTCA
  AACCGAGGTC ACCAGGCTTG AGTGGCAAGC ACTTTTTACC TCCTGAGCCA CCTTGCTGAC
  CCCACAATTA TATTTTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46887172	NES10816457	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29840715					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46887172	NES10816457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32788817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	1582 bp proximal
Gm9859	predicted gene 9859	1433 bp downstream
Mrpl47	mitochondrial ribosomal protein L47	Intron
Rr575021	regulatory region 575021	1832 bp proximal