rs29840458 SNP Detail

Summary

• ID
  rs29840458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30074253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCTCTC TCTTTCTCTC
  TCTTTCACTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCGC
  TCTCTCGCTC TCTCGCTCTC GCTCTGCTTC CCTGGAAGAT GTCTGTCCAT GTCTGGCATG
  CACCTGAGCT TCTCCATTCC CATTTACTGT GTCCTCTGCT AATCAGGCTA ATCAGCAAGA
  R
  AGCCTTATAA ACAAAGGTGA ACAGGGACCC AAAGAGGTAA GCTCGAACAG GAGCGCGCAT
  GCGTGCTCGC CCACACATCA CACCCGCCCC TCAGGTCAGA AAAGGCATGC CTTACTTACA
  ATGTCCTCTG GTAAACTTCA CATGCCAGAA AAACGAGAAT TAGGTAGGTA TAATTTACCC
  CTTGTTGCCT AGGGTCTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886491	NES10818791	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29840458					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886491	NES10818791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30074253 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			within coordinates
Rr574707	regulatory region 574707			1472 bp distal
Rr574708	regulatory region 574708			266 bp distal
Rr574709	regulatory region 574709			within coordinates